This is a place for AGRF hosted R Shiny applications:

FindMySNP allows users to check the presence or absence of SNP rsIDs across major Illumina microarrays, including the EPICv2 methylation chip. You can also search array annotations by gene symbol and compare gene coverage across multiple arrays.

FindMyTax not an ATO application. It searches bacteria name in taxonomy annotation for Silva reference database used for 16S rDNA amplicon sequencing. Matched sequences can be aligned with 16S primer and downloaded in FASTA format.It can answer questions like “Is my bacteria is in Silva database?” or “What identificatiuon can be done with the default primers?”.

CRC TiME Data Browser This application allows users to explore a 16S rDNA dataset from soil microbiome samples collected at mining re-vegetation sites. It provides access to full experimental metadata, UMAP-based clustering options, and differential abundance analysis based on user-selected contrasts. ⚠️ Due to a data embargo, access to this application is restricted. Please contact us if you would like to request access.
MicrobialLandScape This application allows users to upload output from AGRF’s DivPro pipeline (relative abundance CSV files) and integrate their data with the Australian Microbiome Initiative (AMI) reference dataset. It performs: machine learning predictions for soil physicochemical properties, dimensionality reduction with UMAP, annotation with the National Vegetation Information System (NVIS v7) and Australian Land Use System (ALUM v8). Individual sample reports can be generated as self-contained HTML files summarizing key findings. 🚧 This application is still under development but is currently open access.

Visitor counter. A small utility app that extracts and visualizes visit traces from website log files.